Package: CroPlotR 1.0.1
Remi Vezy
CroPlotR: A Package to Analyze Crop Model Simulations Outputs with Plots and Statistics
CroplotR aims at the standardization of the process of analyzing the outputs of crop models using plots and statistics. Users can generate plots presented in dynamic mode with time on the x axis and any simulated and/or observed variable(s) on the y axis or in scatter mode with simulation on the y axis and observations on the x axis. Users can differentiate simulations and observations depending on the situation, model version, or any grouping variable. Thirty two corresponding statistics can be computed in the same manner to assess the quality of the predictions of a model.
Authors:
CroPlotR_1.0.1.tar.gz
CroPlotR_1.0.1.zip(r-4.7)CroPlotR_1.0.1.zip(r-4.6)CroPlotR_1.0.1.zip(r-4.5)
CroPlotR_1.0.1.tgz(r-4.6-any)CroPlotR_1.0.1.tgz(r-4.5-any)
CroPlotR_1.0.1.tar.gz(r-4.7-any)CroPlotR_1.0.1.tar.gz(r-4.6-any)
CroPlotR_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CroPlotR/json (API)
NEWS
| # Install 'CroPlotR' in R: |
| install.packages('CroPlotR', repos = c('https://sticsrpacks.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sticsrpacks/croplotr/issues
Last updated from:ba93557c6a. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 254 | ||
| source / vignettes | OK | 226 | ||
| linux-release-x86_64 | NOTE | 258 | ||
| macos-release-arm64 | NOTE | 134 | ||
| macos-oldrel-arm64 | NOTE | 176 | ||
| windows-devel | NOTE | 226 | ||
| windows-release | NOTE | 226 | ||
| windows-oldrel | NOTE | 206 | ||
| wasm-release | OK | 117 |
Exports:ABSadd_situation_colBiasBias2bind_rowsbind_rows_simCV_obsCV_simDecisionEFextract_plotformat_croprFVUInterLCSMAEMAPEmean_obsmean_simMSEn_obsnRMSENSEpMSEspMSEur_meansR2rbias2rLCSRMERMSERMSEsRMSEurRMSErRMSEsrRMSEurSDSDsave_plot_pdfsave_plot_pngsd_obssd_simSDSDSlopesplit_df2simSS_restLimittSTUD
Dependencies:clicpp11dplyrfarvergenericsggh4xggplot2ggrepelgluegridExtragtableisobandlabelinglifecyclemagrittrpillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrtibbletidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| '[' method for 'cropr_simulation' | [.cropr_simulation |
| Bind simulation list into dataframe | bind_rows |
| Detects if a situation is a mixture | detect_mixture |
| Extract plot(s) from ggplot | extract_plot |
| Format simulations and observations from CropR format to a format usable by CroplotR | format_cropr |
| Plot situations by group of simulation | autoplot.cropr_simulation plot.cropr_simulation |
| Plot statistics | plot.statistics |
| Model quality assessment | ABS Bias Bias2 CV_obs CV_sim Decision EF FVU Inter LCS MAE MAPE mean_obs mean_sim MSE nRMSE NSE n_obs pMSEs pMSEu predictor_assessment R2 rbias2 rLCS RME RMSE RMSEs RMSEu rRMSE rRMSEs rRMSEu rSDSD r_means SDSD sd_obs sd_sim Slope SS_res tLimit tSTUD |
| Save CroPlotR plots | save_plot_pdf |
| Save CroPlotR plot | save_plot_png |
| Split data.frame into Cropr format | split_df2sim |
| Summary statistics of simulations | summary.cropr_simulation |
